Package: directPA 1.5.1

directPA: Direction Analysis for Pathways and Kinases

Direction analysis is a set of tools designed to identify combinatorial effects of multiple treatments/conditions on pathways and kinases profiled by microarray, RNA-seq, proteomics, or phosphoproteomics data. See Yang P et al (2014) <doi:10.1093/bioinformatics/btt616>; and Yang P et al. (2016) <doi:10.1002/pmic.201600068>.

Authors:Pengyi Yang & Ellis Patrick

directPA_1.5.1.tar.gz
directPA_1.5.1.zip(r-4.7)directPA_1.5.1.zip(r-4.6)directPA_1.5.1.zip(r-4.5)
directPA_1.5.1.tgz(r-4.6-any)directPA_1.5.1.tgz(r-4.5-any)
directPA_1.5.1.tar.gz(r-4.7-any)directPA_1.5.1.tar.gz(r-4.6-any)
directPA_1.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
directPA/json (API)

# Install 'directPA' in R:
install.packages('directPA', repos = c('https://pyanglab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/pyanglab/directpa/issues

Datasets:

On CRAN:

Conda:

4.16 score 1 packages 32 scripts 400 downloads 9 exports 66 dependencies

Last updated from:6aa81fc102. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK135
source / vignettesOK193
linux-release-x86_64OK143
macos-release-arm64OK113
macos-oldrel-arm64OK84
windows-develOK82
windows-releaseOK67
windows-oldrelOK77
wasm-releaseOK126

Exports:directExplorer2ddirectPAgeneStatskinasePApathwayStatsperturbPlot2dperturbPlot3drotate2drotate3d

Dependencies:askpassbase64encbslibcachemcalibrateclicpp11crosstalkcurldata.tabledigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlazyevallifecyclemagrittrMASSmemoisemimeopensslotelpillarpkgconfigplotlypromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunyaml